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EMBO Practical Course

Sample2Image: cell & tissue processing for 3D imaging and histopathology

03 – 09 July 2026 | Oeiras, Portugal

  • Registration Deadline
  • 25 April 2026
  • Virtual Resgistration Deadline
  • 20 June 2026
  • Chosen Participants Will Be Notified By
  • 11 May 2026
  • Payment Deadline
  • 25 May 2026

Apply now!

Use #EMBOcourseS2I

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About the Practical Course

Accurate and reproducible data in fundamental biological research and disease diagnostics relies on proper specimen preservation, clear visibility of cellular components, precise labeling of molecular markers and on advanced biological imaging. Expertise in tissue analysis is crucial also for therapeutic applications, as histopathology continues to be the gold-standard for diagnosing illnesses like cancer. Point scanning optical sectioning, light-sheet microscopy, and optical tomography are technologies that can better address the vast spatial and molecular analysis needed to fully understand biological processes and disease mechanisms. High-resolution deep-tissue imaging is now possible thanks to significant advancements in sample labelling, tissue clearing, and 3D imaging technology that have expanded our knowledge of complex cellular and tissue structures. Histopathology lags behind in adoption of these developments, often relying on outdated manual processes, with limited scalability and efficiency. Integrating innovative approaches such as AI-driven analysis, novel staining techniques, and automated tissue processing is crucial to bridge this gap and enhance diagnostic and research capabilities. By equipping new researchers with cutting-edge techniques, we ensure high-quality data, pave the way for novel discoveries and improve patient outcomes. Strengthening these skills accelerates biomedical innovation and enhances our ability to study and treat diseases more effectively.


About EMBO Courses and Workshops

EMBO Courses and Workshops are selected for their excellent scientific quality and timelines, provision of good networking activities for all participants and speaker gender diversity (at least 40% of speakers must be from the underrepresented gender).

Organisers are encouraged to implement measures to make the meeting environmentally more sustainable.

 
 

Programme

 

Registration

  • Registration Deadline
  • 25 April 2026
  • Virtual Resgistration Deadline
  • 20 June 2026
  • Chosen Participants Will Be Notified By
  • 11 May 2026
  • Payment Deadline
  • 25 May 2026

 

  • STUDENT/POSTDOCS EUR 250
  • ACADEMIC EUR 350
  • INDUSTRY EUR 1100
  • VIRTUAL EUR 50

Registration includes:

In person participants:

The registration fee is all-inclusive and covers:

  • accommodation
  • local transport (hotel-venue-hotel)
  • all meals and social events
  • full access to all course materials, lab materials used during course and data storage

Online participants: The fee for online attendance includes:

  • virtual participation in all talks/round-table discussions
  • access to online-course materials
  • online access to practical equipment demos (video)
  • and dedicated call-4-help support session

Registration informtaion

Applicants must submit a motivation letter detailing their previous experience with the techniques addressed in the course, the specific challenges they have encountered, and their expectations for what they will learn and get out of the course. The letter should also outline plans for skill application and/or dissemination. All participants must bring their own samples and be available to share insights with the group.

Payment

Participants will be sent details about payment via email upon acceptance.

Cancellation Policy

Cancellations are accepted up to 1 month before the event starts, entitling the applicant to a full refund. After June 3rd, an 80% refund will only be issued if a replacement participant is found and their attendance is confirmed.

Selection criteria

We value applicants who demonstrate a clear and immediate need to learn and apply the techniques addressed in the course (grad students, post-docs & early career researchers), and those that demonstrate potential to disseminate and train other researchers (e.g., facility staff, lab managers or industry application specialists). Selection will also take into consideration geographical and gender balance, as well as the diversity of samples proposed by the applicant to bring to the course, to maximize the range of experiences and topics shared in the course.

Demonstrated interest and motivation regarding the topics of the course are prioritized over personal academic achievements or publications of the applicants.

Travel grants and registration fee waivers

Travel grants and registration fee waivers are available for participants.

Selection of awardees is handled directly by the organizers. EMBO travel grants and registration fee waivers are allocated on the basis of the quality of the submitted abstract.

Applicants do not need to apply separately for these but should indicate on the registration form if they wish to be considered.

Additional travel grants are available for EMBC Associate Member States Chile, India, Singapore and Taiwan.

Child care grants

EMBO Courses and Workshops offers grants to offset additional childcare costs incurred by participants or speakers when participating at any EMBO Courses and Workshop funded meeting. Eligible costs include fees for a caregiver or child-care facility, travel costs for a caregiver, or travel costs for taking the child to the meeting etc. Please indicate on the registration form whether you would like to be considered for the grant. Please also describe how you intend to use the childcare grant and specify the sum that you will need.

Accessibility grants

EMBO offers accessibility grants to support participants at EMBO Courses & Workshops with any access needs. These grants cover up to 500 Euros for any additional costs e.g. to adapt the conference environment, or to be accompanied by someone to assist them where necessary.

Participants with access needs may apply for a grant via the registration system of the related EMBO event, or by emailing the organizers of the related EMBO event directly.


Code of conduct

Anti-harassment and non-discrimination policy

At EMBO, we believe that harassment and discriminatory behaviour are unacceptable in any setting.

Media and communications policy

Recording or communication of the presented data needs to be agreed upon by all concerned.

EMBO's code of conduct is applicable for all participants of this EMBO meeting and can be found here.

 

Contact

Regina Fernandes

Email: regina.zenkl@gimm.pt​

 

 

Venue

GIMM – Gulbenkian Institute for Molecular Medicine (Oeiras Campus)

R. Quinta Grande, 6

2780-156 Oeiras – Portugal

Accommodation

To encourage networking, students will be lodged in the same hotel as speakers and will be accommodated in shared double rooms with a fellow participant (if you have a reason which impedes you from sharing a room, please let us know in advance).

Transport

Lisbon International Airport is conveniently located just 16km from the venue. There are multiple public transportation options, including subway, train, bus or taxis. From the closest train station, the venue is only a 5-10 minute walk.

Reaching the GIMM via Public Transport (Metro + Train; ~1h):

This is the recommended route. We suggest purchasing a “Navegante ocasional” card (0.5€) at any Metro station and loading it with 20€, which should cover your travel for the week. Please keep thereceipt so we can reimburse you, as a reward for choosing the more sustainable option.

1) At the airport, board the Metro’s Red line (“Linha Vermelha”) toward “São Sebastião”.

2) At “Alameda” station, change to the Green line (“Linha Verde”) toward “Cais do Sodré”.

3. At “Cais do Sodré” station, follow the signs to the CP train platforms and take the train toward “Cascais”.

4) Get off at the “Oeiras” station.

5) Walk 500m (5-6 minutes) to GIMM.

(Cost: ~2€ per trip with the rechargeable “Navegante” card).

Reaching the GIMM by Taxi or Ride-Hailing (Uber / Bolt):

Alternatively, you can take an official taxi from outside the arrivals area at Lisbon Airport. A ride to Oeiras typically takes about 20–30 minutes and costs roughly €30–€70 depending on traffic, time of day, and exact drop-off point. Ride-hailing apps (Uber or Bolt) offer similar travel times to taxis, and often are slightly more economical and give you a fixed fare up front. Please note that these transportation costs are not eligible for reimbursement.

About the Area

Please be aware that GIMM has two campuses. The course will take place exclusively at the Oeiras campus, NOT the Lisbon campus (which happens to be closer to the airport), and your accommodation is in Oeiras. Always ensure your destination is set to GIMM Oeiras.

Sustainability at the meeting

The EMBO Courses & Workshops Programme assesses meetings based on the proposal and implementation of sustainability measures. Meetings can earn points across a range of measures, with each measure assigned a point value from one to five. These points classify the meeting into one of three sustainability levels, reflecting the organizers' commitment to enhancing the sustainability of their event. More information on the EMBO Courses & Workshops Sustainability Badge can be found here.

Travel and Mobility:

Overseas speakers will deliver their talks virtually (from the USA and Japan), thereby avoiding long-distance travel and reducing associated emissions. Although the course is highly hands-on, it also provides options for remote participation, allowing broader access without requiring physical travel. Participants will receive local public-transport passes for the duration of the course. While international train access to Portugal remains limited, local transportation is efficient. Speakers will be encouraged to travel to Portugal by train where feasible, and students who choose train travel will receive a 50% discount on the registration fee. Two speakers traveling from within Portugal (150 km and 300 km from the venue) have already committed to traveling by train to Oeiras. Participants who must travel by air will be encouraged to offset their CO₂ emissions using airline-provided offset schemes. The additional cost will be reimbursed after the course. Information on reputable offset programs available at Cool Effect and at Gold Standard .


Catering:

Course social events include BBQs that follow established sustainable practices. The canteen provides vegetarian options daily, and one course day will feature vegetarian meals only. Coffee will be available alongside a continuous supply of locally sourced fruit and bread. Water fountains are available throughout the institute, and participants are encouraged to bring reusable bottles or mugs. Disposable promotional materials will be discouraged, and no promotional materials will be requested from EMBO.


Materials and Paper Use:

All course materials will be provided exclusively in digital format. Printed handouts have been eliminated and replaced by a cloud-based “live booklet” that is continuously updated during the course and allows participant contributions, substantially reducing paper consumption.


Sustainable Laboratory Practices:

Given the relevance of sustainability to tissue-processing workflows, the course will include a dedicated roundtable discussion on eco-friendly reagents and sustainable waste management. Practical recommendations for replacing hazardous reagents will be shared, and participants will be encouraged to exchange experiences and explore alternative approaches.

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