Your browser does not support or is disabling JavaScript.

stamp
MENU
 

EMBO Practical Course

Pangenomics

07 – 13 June 2026 | Campania region, Italy

  • Registration Deadline
  • 3 February 2026 
  • Abstract Submission Deadline
  • 3 February 2026 
  • Chosen Participants Will Be Notified By
  • 17 February 2026 
  • Payment Deadline
  • 8 March 2026 

Apply now!

Use #EMBOPangenomics

Download calendar invitation

poster

Download
poster

About the Practical Course

Pangenomics has emerged as a transformative paradigm in genomics, moving from single linear reference genomes to pangenomesthat capture the full spectrum of genetic variation within species. Recent breakthroughs include the completion of the human pangenome reference by the Human Pangenome Reference Consortium (HPRC), revealing millions of previously hidden variants and structural variations that traditional approaches missed. Advanced graph-based representations now enable comprehensive analysis of complex genomic regions, including highly variable immune loci and centromeres.

Key technological advances include improved algorithms for pangenome construction (PGGB, WFMASH, IMPG), sophisticated visualization tools (ODGI), and novel genotyping methods from graph references (PanGenie, POVU). Course organizers and instructors contributed directly to HPRC, developing these cutting-edge methodologies and software. These advances are transforming genome evolution, population genetics, and disease research across diverse organisms.

This EMBO Practical Course addresses a critical gap in computational biology training. While pangenomics tools are rapidly advancing, researchers lack comprehensive hands-on experience with these specialized methods.

This EMBO Practical Course uniquely combines theoretical foundations with practical implementation across the entire pangenomics workflow—from graph construction through variant analysis. By training the next generation of computational biologists in these cutting-edge approaches, we will accelerate the adoption of pangenomics methods and enable more complete characterization of genetic diversity in research worldwide.

Artwork by Birdcap


About EMBO Courses and Workshops

EMBO Courses and Workshops are selected for their excellent scientific quality and timelines, provision of good networking activities for all participants and speaker gender diversity (at least 40% of speakers must be from the underrepresented gender).

Organisers are encouraged to implement measures to make the meeting environmentally more sustainable.

 
 

Programme

 

Registration

  • Registration Deadline
  • 3 February 2026 
  • Abstract Submission Deadline
  • 3 February 2026 
  • Chosen Participants Will Be Notified By
  • 17 February 2026 
  • Payment Deadline
  • 8 March 2026 

 

  • STUDENT/POSTDOCS EUR 550
  • ACADEMIC EUR 550
  • INDUSTRY EUR 1100

Registration includes:

  • Accommodation in shared room for 7 nights (IN: 07/06/2026; OUT: 14/06/2026)
  • Catering (lunches, coffee breaks, dinners)
  • Course materials

Registration Information

Students are required to attend the entire course, arriving punctually on the first day, being on time for all programme sessions and remaining until the programme concludes.

Participants are expected to bring their own laptop; if not possible, this should be declared during registration.

Students will share rooms.

We encourage speakers and participants to take trains within Europe for distances, for e.g. under 800 km or under 6–8 hours of travel time to promote the reduction in CO2 emissions in order to lessen environmental impact.

Payment

Successful participants will receive payment details by email.

Cancellation policy

Cancellations must be notified in writing to the Course Organizers at the earliest convenience, and no latest 1-month before the course start date, to allow other participants to be notified in time. Cancellations received prior to 1 May 2026 will be entitled to a full refund minus any expenses (e.g. bank charges) and 50 Euro for secretarial fee. No refunds will be provided for cancellations received after this date.

Selection criteria

This course is aimed primarily at researchers working in biology, evolutionary genomics, population genomics, computational biology, comparative genomics, and bioinformatics.
Candidates will be selected based on:

  • Advanced knowledge of the Linux command line and remote server usage. Knowledge of advanced programming languages is a plus
  • Solid background in genomics, DNA sequencing, and sequence data formats
  • Lack of previous knowledge of the pangenomics tools taught (we want you to learn new skills)
  • Opportunity to apply the learning outcomes to their work soon after the course
  • Impact of the course on the participant and his/her research group (we discourage multiple applications from the same group)
  • Submission of an abstract about current research (mandatory)

Fulfillment of the above conditions by participants will be assessed through the registration form.

Abstract guidelines

Abstract guidelines: max 200 words.

To submit the abstract, access your course account after registration. Abstracts should describe participants’ research projects, which will be presented with a poster during the course.

Poster specifications

Poster specifications and dimensions will be sent by email to successful participants.

Grant funded by Bioinformatics Italian Society (BITS)

One grant of 550 Euro, covering the registration fee of one student/post-doc who is a BITS member or works in a lab where the PI is an BITS member, will be awarded by BITS.

Travel grants and registration fee waivers

Travel grants and registration fee waivers are available for participants.

Selection of awardees is handled directly by the organizers. EMBO travel grants and registration fee waivers are allocated on the basis of the quality of the submitted abstract.

A maximum of 500 Euro per participant is available to cover registration fees, travel and accommodation (no additional subsistence costs can be covered). To apply, please indicate the itemized amount requested in the “Travel & Fee Grants” section of the registration form and provide a brief justification for your request.

Special travel grants and registration fee waivers

A limited number of travel grants and registration fee waivers are available for scientists working in Chile, India, Singapore and Taiwan. Grants are allocated on the basis of the quality of the submitted abstract. A maximum of 1,000 Euro per participant is available to cover registration fees, travel and accommodation (no additional subsistence costs can be covered). To apply, please indicate the itemized amount requested in the “Travel & Fee Grants” section of the registration form and provide a brief justification for your request.

Child care grants

EMBO Courses and Workshops offers grants to offset additional childcare costs incurred by participants or speakers when participating at any EMBO Courses and Workshop funded meeting. Eligible costs include fees for a caregiver or child-care facility, travel costs for a caregiver, or travel costs for taking the child to the meeting etc. Applicants should specify their needs in the registration form and provide a justification. The EMBO grant available (a total of 1,000 Euro) will be distributed after all requests are collected.

Accessibility grants

EMBO offers accessibility grants to support participants at EMBO Courses & Workshops with any access needs. These grants cover up to 500 Euros for any additional costs e.g. to adapt the conference environment, or to be accompanied by someone to assist them where necessary. Applicants should specify their needs in the registration form and provide a justification.


Code of conduct

Anti-harassment and non-discrimination policy

At EMBO, we believe that harassment and discriminatory behaviour are unacceptable in any setting.

Media and communications policy

Recording or communication of the presented data needs to be agreed upon by all concerned.

EMBO's code of conduct is applicable for all participants of this EMBO meeting and can be found here.

 

Contact

Nadia Pisanti

Email: embo.pangenomics@gmail.com​

 

 

Venue

Venue based in Campania, Italy (to be announced)

Accommodation

Participants and speakers will be accommodated at the same venue. Participants will be accommodated in shared rooms. Breakfast is included.

Transport

The Campania region is served by Naples International Airport “Capodichino” and can be easily reached by high-speed train (Trenitalia and Italo) from all major Italian cities. We encourage speakers and participants to take trains within Europe for distances, for e.g. under 800 km or under 6–8 hours of travel time to promote the reduction in CO2 emissions in order to lessen the environmental impact.

FROM NAPLES AIRPORT – TO NAPLES TRAIN STATION:

The bus company “Alibus” runs from the Airport to the central train stations "Napoli Centrale" or "Napoli Piazza Garibaldi" (which are the same). Alibus is located outside the arrivals area, runs every approx 15-min and tickets can be purchased on board (€5). The journey to the station takes about 30 min.

Taxis from the airport or from the train station are also available.

About the Area

To be announced.

Sustainability at the meeting

The EMBO Courses & Workshops Programme assesses meetings based on the proposal and implementation of sustainability measures. Meetings can earn points across a range of measures, with each measure assigned a point value from one to five. These points classify the meeting into one of three sustainability levels, reflecting the organizers' commitment to enhancing the sustainability of their event. More information on the EMBO Courses & Workshops Sustainability Badge can be found here.

  • A few remote presentations will be given during the course. Additionally, we encourage speakers and participants to take trains within Europe for distances to promote the reduction in CO2 emissions in order to lessen environmental impact
  • Book of abstracts and programme will be shared in electronic form only, and paper badges will be used
  • Catering will include at least one vegetarian meal and locally sourced ingredients
  • Single-use plastics and plastic water bottles and disposable cutlery will be avoided
Molecular Systems Biology 2025-12/bits.png