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EMBO Practical Course

Transposable Elements in the Era of Data Science

12 – 16 May 2025 | Didcot, United Kingdom

  • Registration Deadline
  • 2 December 2024
  • Abstract Submission Deadline
  • 2 December 2024
  • Chosen Participants Will Be Notified By
  • 7 January 2025
  • Payment Deadline
  • 1 February 2025

Apply now!

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About the Practical Course

High-quality and nearly complete genome assemblies are nowadays accessible to the broader scientific community. These assemblies encompass challenging elements like transposable elements (TEs), historically difficult-to-resolve repetitive DNA, which often make up a significant portion of genomes. Despite their seemingly inert presence, TEs actively drive genome evolution, speciation, and adaptation by fostering genetic diversity. TE research remains technologically challenging as the intrinsic high sequence diversity and diverse presentation require bespoke tools, thus far restricted to the experienced bioinformatician. There exists a notable gap in current genomics research where TEs are understudied despite their crucial evolutionary and functional roles, primarily due to limited accessibility to computational approaches. This EMBO Practical Course offers extensive hands-on experience in the computational analysis of TEs and fosters a collaborative environment for interdisciplinary discussions. World-leading experts in diverse TE fields will guide participants in conducting TE detection and analysis in omics data, providing expertise in cutting-edge tools, databases, and annotation approaches by covering assembled and unassembled genomes. Additionally, participants will also learn the best practices in bioinformatics analysis, advanced artificial intelligence methods for TE annotation, classification, curation and analysis in individual or pangenomics, and TE expression analysis. Through benchmarking tools, this course will provide participants with robust methodologies for comprehensive TE research.

Banner Photo: The Rosalind Franklin Institute. Image Credit: Alex Antitch


About EMBO Courses and Workshops

EMBO Courses and Workshops are selected for their excellent scientific quality and timelines, provision of good networking activities for all participants and speaker gender diversity (at least 40% of speakers must be from the underrepresented gender).

Organisers are encouraged to implement measures to make the meeting environmentally more sustainable.

 

Speakers

 

Programme

 

Registration

  • Registration Deadline
  • 2 December 2024
  • Abstract Submission Deadline
  • 2 December 2024
  • Chosen Participants Will Be Notified By
  • 7 January 2025
  • Payment Deadline
  • 1 February 2025

 

  • STUDENT/POSTDOCS EUR 500
  • ACADEMIC EUR 500
  • INDUSTRY EUR 1500

Registration includes:

  • Accommodation for five nights (check-in Sunday 11th May and check-out Friday 16th May).
  • Full meal package (breakfast, lunch and dinner)
  • Course coffee breaks

We strongly discourage applications of more than one student from the same lab.

To apply, participants must upload an abstract for a poster, a 2-page CV, and a motivation letter.

Please note that ALL participants are required to:

  • present a poster during the course pitch oral presentation (5min) of your poster/work
  • work in a project group to solve a problem be familiar with using the Linux operating system prior to attending the course

Payment

Participants will be able to pay via bank transfer on receipt of a sales invoice from The Rosalind Frankin Institute. The invoice and instructions for payment will be communicated via email on acceptance

Cancellation Policy

Cancellations and refund requests should be made by emailing the admin contact (Kellie Farmer - kellie.farmer@rfi.ac.uk). Refunds will be issued as soon as possible and no later than one month after the conference has concluded. The refund will be made back to the card used for initial payment.

Refund policy:

  • Request up to the end of Feb/2025: Full refund

After Feb/2025: No refund

Selection criteria

Participants will need to submit:

  1. An abstract (for a poster and oral presentation).
  2. A CV (maximum of two pages) detailing the applicant’s education and academic record.
  3. A motivation letter of a maximum of 200 words.

Participants will also need to answer how the course aligns with their current research endeavors and its potential impact.

Audience: The course primarily targets PhD students, early career researchers, and post-docs.

Selection criteria will prioritise applicants based on the following factors:

(i) The quality of their CV, abstract, and motivation letter, assessing how the course aligns with their current research endeavors and its potential impact.

(ii) Geographical distribution to ensure diverse representation.

(iii) Gender balance to promote inclusivity and diversity.

(iv) Relevance of their projects to the course objectives, aiming to maximize mutual benefits for participants and their research groups

(v) Those participants with basic experience in Unix/Linux data manipulation and programming.

(vi) Those participants with diverse research interests related to the course theme to encourage interdisciplinary collaboration and foster a rich learning experience.

(vii) Focus on Early career researchers (including postdocs) who will present their research..

Abstract guidelines

* Title: The title should not exceed 15 words. Only the first word of the title should start with a capital letter and the rest should be lowercase.

* Authors and affiliations: Please fill in the author’s details using the following format: First Name, Last Name, Organisation Name (Affiliation or Company), Country and Email. Please also indicate who will be the presenter.

* Abstract body: Maximum of 200 words. Please do not cite literature within the abstract body.

Poster specifications

Posters should be in a portrait orientation with dimensions that do not exceed the standard A0 size of 84.1 cm x 118.9 cm.

Additional Requirements

Participants will also need to submit:

  • Motivation Letter (max 200 words)
  • CV (up to 2 pages)

Participants will also need to answer how the course aligns with their current research endeavors and its potential impact.

Travel grants and registration fee waivers

Travel grants and registration fee waivers are available for participants.

Selection of awardees is handled directly by the organizers. EMBO travel grants and registration fee waivers are allocated on the basis of the quality of the submitted abstract.

Applicants do not need to apply separately for these but should indicate on the registration form if they wish to be considered.

Additional travel grants are available for EMBC Associate Member States Chile, India, Singapore and Taiwan.

Child care grants

EMBO Courses and Workshops offers grants to offset additional childcare costs incurred by participants or speakers when participating at any EMBO Courses and Workshop funded meeting. Eligible costs include fees for a caregiver or child-care facility, travel costs for a caregiver, or travel costs for taking the child to the meeting etc. Please indicate on the registration form whether you would like to be considered for the grant. Please also describe how you intend to use the childcare grant and specify the sum that you will need.


Code of conduct

Anti-harassment and non-discrimination policy

At EMBO, we believe that harassment and discriminatory behaviour are unacceptable in any setting. EMBO's code of conduct is applicable for all participants of this EMBO meeting and can be found here.

 

Contact

Alexandre Rossi Paschoal

Email: alexandre.paschoal@rfi.ac.uk

Kellie Farmer

Email: kellie.farmer@rfi.ac.uk

 

 

Venue

Rosalind Franklin Institute

Building R113 Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QX

Advance Training Centre - Mary Lyon Centre at MRC Harwell

Becquerel Ave, Harwell Campus, Oxfordshire, OX11 0RD

Accommodation

Reservations for shared ensuite double rooms (two single beds) at the Cosener’s House have been made for participants.

Please note, the price of the accommodation is included in the registration fee. Coaches to the Harwell Campus are provided to enable direct transfer of participants between the accommodation and the venue of the practical course on a daily basis. On the last day (Friday), the arranged transport will take participants Didcot Parkway Railway Station (Station Road, Didcot, Oxfordshire, OX11 7NR ) after the closing session.

The Cosener's House

15 - 16 Abbey Close, Abingdon, Oxfordshire, OX14 3JD

T: 01235 523 198

E: coseners@stfc.ac.uk

Transport

Further Information

From London Heathrow: A return train ticket from London Heathrow airport to Didcot Parkway is approximately £50 (approx 1h 15m.) The national express from the airport to Oxford Gloucester Green costs ~£40 for a return and takes approximately 1h 40m. Onwards from Oxford city centre to Abingdon and the Cosener’s House, there are a few bus options that take around 30 minutes.

From London Gatwick and other airports: The recommended option from Gatwick is to take the National Express service from Gatwick to Oxford, and it is also possible to take the train to Didcot Parkway. All UK airports have public transport options to Oxford.

From Didcot Parkway Railway Station: There is a direct bus connection to the accommodation from outside Didcot rail station which costs ~£3 each way and takes approximately 30 minutes. A taxi costs ~£15-20.

Please allow for traffic and delays at peak times.

About the Area

The Rosalind Franklin Institute is inside the Harwell Science and Innovation Centre. The Harwell Campus, located in the Oxfordshire countryside, hosts many of the UK’s national research centers including the Rosalind Franklin Institute, and the Mary Lyon Centre (MLC). Harwell is located in the beautiful countryside just south of Oxford, one of the fastest growing cities in the UK. Oxford city center is just over 30 minutes drive away, Heathrow is 55 minutes by road, and nearby Didcot Parkway station (the closest city to Harwell campus).

Coaches between the accommodation and location of the practical course will be provided twice daily.

From the airport: London Heathrow is less than one hour by road. A return train ticket from London Heathrow airport to Didcot Parkway is approximately £50 (approx 1h 15m.) From London Heathrow, a bus/coach could be taken to Oxford either by Oxford Airlines or National Express.

The national express coach from London Heathrow airport to Oxford Gloucester Green costs ~£40 for a return and takes approximately 1h 40m (please allow for traffic and delays at peak times). There are a few bus options that take around 30 minutes from Oxford city centre to Abingdon or Harwell. We recommend using the Oxford Bus app (The Oxford Bus app - Oxford Bus Company and Thames Travel ) (we recommend installing the app or checking the website). Other airports such as Birmingham, Southampton, Luton and Gatwick are all accessible by public transport to Oxford (either national express or by train). We recommend using the national express website: Welcome to the Official source for UK trains | National Rail , or downloading the trainline app for train times.

From Didcot Parkway: Didcot Parkway rail station is only five miles away, with direct services to Central London (Paddington) in under 42 minutes and Oxford City Centre in under 15 minutes. Buses from Didcot to Harwell range from 19 to 25 minutes and 30-40 min from Oxford. In general, there are five different bus lines available, depending on the place you get the bus. It is possible to get a bus to Harwell from Oxford and Didcot, where the latter is the closest city. (ELECTRICAL) CARS: There are a few public car parks around the campus, with spaces available at the Thomson car park and the Ridgeway car park. For electric car owners there are electric charge points located at RAL Reception (R75).

GENERAL: Frequent bus services, taxi’s and bike hire are available for onward travel to the campus.

Sustainability at the meeting

The EMBO Courses & Workshops Programme assesses meetings based on the proposal and implementation of sustainability measures. Meetings can earn points across a range of measures, with each measure assigned a point value from one to five. These points classify the meeting into one of three sustainability levels, reflecting the organizers' commitment to enhancing the sustainability of their event. More information on the EMBO Courses & Workshops Sustainability Badge can be found here: https://www.embo.org/conferences-training/sustainable-conferencing/

The Harwell Campus including the Rosalind Franklin Institute, Science and Technologies and Facilities Council and the Research Complex at Harwell are committed to sustainability.

All stakeholders have introduced new green energy measures onto campus including solar panels on the roofs of campus building and over car parks, that will generate at least 2.5 GWhs of electricity per year.

All course materials will be provided digitally to course participants, this includes abstract books and programs to minimize printing on paper.

Reusable badges will be used.

Speakers will be encouraged to travel using sustainable methods to the conference, such as by public transport and cycling.

The Mary Lyon Centre course venue will accommodate sustainable coffee-breaks and meals, including all the materials e.g. supplying reusable water bottles made from plant-based materials.

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